STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001020200Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (652 aa)    
Predicted Functional Partners:
KFL_000730160
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.909
KFL_002220210
Ornithine aminotransferase.
    
 0.870
KFL_004630070
Diaminopimelate epimerase.
  
 0.865
KFL_003190090
Dihydrodipicolinate reductase.
  
 
 0.865
KFL_000540320
Aspartate semialdehyde dehydrogenase.
  
 
 0.862
KFL_002830070
Lysine-ketoglutarate reductase.
  
 
 0.851
KFL_001010060
Argininosuccinate synthase.
  
 
 0.836
KFL_009060040
Carbon-nitrogen hydrolase.
    
 0.824
KFL_002250040
Ornithine cyclodeaminase.
  
 
 0.813
KFL_000900110
Amine oxidase.
     
 0.810
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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