STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000470110Uncharacterized protein. (381 aa)    
Predicted Functional Partners:
KFL_008910050
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.791
KFL_002610100
DNA-directed RNA polymerase II subunit 8; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.573
KFL_003190150
Non-catalytic subunit of nuclear DNA-dependent RNA polymerases.
    
  0.553
KFL_001250270
Ketose-bisphosphate aldolase class-II family protein.
    
 0.542
KFL_000610160
DNA-directed RNA polymerase II subunit 4.
    
  0.541
KFL_001690110
Eukaryotic translation elongation factor 1 gamma.
    
 0.541
KFL_004750100
DNA-directed RNA polymerase II subunit 11.
    
  0.525
KFL_000530260
Uncharacterized protein.
    
  0.521
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
    
 0.520
KFL_002560020
DNA-directed RNA polymerase II subunit 5.
    
  0.517
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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