STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000360250Sorting nexins and related PX domain-containing proteins. (547 aa)    
Predicted Functional Partners:
KFL_000970350
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.905
KFL_001980230
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.905
KFL_001110190
Membrane coat complex Retromer.
    
 
 0.904
KFL_002320230
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.734
KFL_004700060
Sortilin.
    
 0.665
KFL_003070040
Photosystem II stability/assembly factor HCF136.
    
 0.665
KFL_002570090
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.655
KFL_003900030
Uncharacterized protein.
    
 0.655
KFL_002830100
AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles.
     
 0.640
KFL_004120120
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.631
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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