STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001220030Uncharacterized protein; Belongs to the DEAD box helicase family. (646 aa)    
Predicted Functional Partners:
KFL_001360090
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.848
KFL_000940080
Uncharacterized protein.
   
 0.817
KFL_005840040
RNA-binding protein 8A.
    
 0.806
KFL_000050430
G domain-containing protein.
  
  0.785
KFL_002230170
GTP-binding family protein.
  
  0.785
KFL_006360020
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.779
KFL_000800170
Splicing factor.
   
 0.769
KFL_009860030
Sas10/Utp3/C1D family protein.
 
 
  0.760
KFL_004340070
THO complex subunit 4.
   
 0.749
KFL_001090120
Telomere_Sde2 domain containing protein.
   
  0.748
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (26%) [HD]