KFL_001240160 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_001240160

Uncharacterized protein. (454 aa)

Predicted Functional Partners:

KFL_005370010

0.872

KFL_000410250

0.703

KFL_003500110

0.667

KFL_001690180

0.583

KFL_004690030

0.580

KFL_001440120

0.571

KFL_000310120

0.555

KFL_000670040

0.555

KFL_000060350

0.523

KFL_000850360

0.523

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000060350	KFL_001240160	A0A0U9HIU6	A0A1Y1HVY7	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.523
KFL_000060350	KFL_005370010	A0A0U9HIU6	A0A1Y1IF94	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.523
KFL_000310120	KFL_000410250	A0A1Y1HR53	A0A1Y1HTS2	DUF4097 domain-containing protein.	Peroxin 5.	0.984
KFL_000310120	KFL_001240160	A0A1Y1HR53	A0A1Y1HVY7	DUF4097 domain-containing protein.	Uncharacterized protein.	0.555
KFL_000310120	KFL_001440120	A0A1Y1HR53	A0A1Y1HXC9	DUF4097 domain-containing protein.	Ubiquitin/40S ribosomal protein S27a fusion.	0.650
KFL_000310120	KFL_001690180	A0A1Y1HR53	A0A1Y1HZ50	DUF4097 domain-containing protein.	Peroxin 10.	0.885
KFL_000310120	KFL_004690030	A0A1Y1HR53	A0A1Y1IDB5	DUF4097 domain-containing protein.	Peroxin 12.	0.911
KFL_000310120	KFL_005370010	A0A1Y1HR53	A0A1Y1IF94	DUF4097 domain-containing protein.	Uncharacterized protein.	0.555
KFL_000410250	KFL_000310120	A0A1Y1HTS2	A0A1Y1HR53	Peroxin 5.	DUF4097 domain-containing protein.	0.984
KFL_000410250	KFL_000670040	A0A1Y1HTS2	A0A1Y1HWR3	Peroxin 5.	Pex14_N domain-containing protein.	0.989
KFL_000410250	KFL_001240160	A0A1Y1HTS2	A0A1Y1HVY7	Peroxin 5.	Uncharacterized protein.	0.703
KFL_000410250	KFL_001440120	A0A1Y1HTS2	A0A1Y1HXC9	Peroxin 5.	Ubiquitin/40S ribosomal protein S27a fusion.	0.726
KFL_000410250	KFL_001690180	A0A1Y1HTS2	A0A1Y1HZ50	Peroxin 5.	Peroxin 10.	0.948
KFL_000410250	KFL_004690030	A0A1Y1HTS2	A0A1Y1IDB5	Peroxin 5.	Peroxin 12.	0.987
KFL_000410250	KFL_005370010	A0A1Y1HTS2	A0A1Y1IF94	Peroxin 5.	Uncharacterized protein.	0.703
KFL_000670040	KFL_000410250	A0A1Y1HWR3	A0A1Y1HTS2	Pex14_N domain-containing protein.	Peroxin 5.	0.989
KFL_000670040	KFL_001240160	A0A1Y1HWR3	A0A1Y1HVY7	Pex14_N domain-containing protein.	Uncharacterized protein.	0.555
KFL_000670040	KFL_001440120	A0A1Y1HWR3	A0A1Y1HXC9	Pex14_N domain-containing protein.	Ubiquitin/40S ribosomal protein S27a fusion.	0.650
KFL_000670040	KFL_001690180	A0A1Y1HWR3	A0A1Y1HZ50	Pex14_N domain-containing protein.	Peroxin 10.	0.886
KFL_000670040	KFL_004690030	A0A1Y1HWR3	A0A1Y1IDB5	Pex14_N domain-containing protein.	Peroxin 12.	0.915