KFL_000630090 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_000630090

BRCT domain-containing protein. (1378 aa)

Predicted Functional Partners:

KFL_003810040

0.991

KFL_003260090

0.966

KFL_000250470

0.948

KFL_003020030

0.938

KFL_000450200

0.938

KFL_003490090

0.934

KFL_001840010

0.921

KFL_000500370

0.902

KFL_007880010

0.896

KFL_001160090

0.888

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000250470	KFL_000450200	A0A1Y1HPN3	A0A1Y1HN56	Helicase.	DNA repair protein Rad9; Belongs to the rad9 family.	0.615
KFL_000250470	KFL_000630090	A0A1Y1HPN3	A0A1Y1HWC9	Helicase.	BRCT domain-containing protein.	0.948
KFL_000250470	KFL_001160090	A0A1Y1HPN3	A0A1Y1I1D2	Helicase.	BRCA1-associated RING domain protein 1.	0.946
KFL_000250470	KFL_003020030	A0A1Y1HPN3	A0A0U9HVF9	Helicase.	Zinc-finger domain of monoamine-oxidase A repressor R1.	0.615
KFL_000250470	KFL_003260090	A0A1Y1HPN3	A0A1Y1IE91	Helicase.	Protein kinase of the PI-3 kinase family; Belongs to the PI3/PI4-kinase family.	0.755
KFL_000250470	KFL_003810040	A0A1Y1HPN3	A0A1Y1IA94	Helicase.	Helicase conserved C-terminal domain containing protein.	0.990
KFL_000450200	KFL_000250470	A0A1Y1HN56	A0A1Y1HPN3	DNA repair protein Rad9; Belongs to the rad9 family.	Helicase.	0.615
KFL_000450200	KFL_000630090	A0A1Y1HN56	A0A1Y1HWC9	DNA repair protein Rad9; Belongs to the rad9 family.	BRCT domain-containing protein.	0.938
KFL_000450200	KFL_001160090	A0A1Y1HN56	A0A1Y1I1D2	DNA repair protein Rad9; Belongs to the rad9 family.	BRCA1-associated RING domain protein 1.	0.737
KFL_000450200	KFL_003260090	A0A1Y1HN56	A0A1Y1IE91	DNA repair protein Rad9; Belongs to the rad9 family.	Protein kinase of the PI-3 kinase family; Belongs to the PI3/PI4-kinase family.	0.928
KFL_000450200	KFL_003490090	A0A1Y1HN56	A0A1Y1IF89	DNA repair protein Rad9; Belongs to the rad9 family.	Cell division cycle 45(CDC45)-related protein.	0.438
KFL_000450200	KFL_003810040	A0A1Y1HN56	A0A1Y1IA94	DNA repair protein Rad9; Belongs to the rad9 family.	Helicase conserved C-terminal domain containing protein.	0.991
KFL_000500370	KFL_000630090	A0A1Y1HNR3	A0A1Y1HWC9	26S proteasome regulatory subunit.	BRCT domain-containing protein.	0.902
KFL_000500370	KFL_001840010	A0A1Y1HNR3	A0A1Y1I2W6	26S proteasome regulatory subunit.	DNA helicase; Belongs to the MCM family.	0.432
KFL_000500370	KFL_003490090	A0A1Y1HNR3	A0A1Y1IF89	26S proteasome regulatory subunit.	Cell division cycle 45(CDC45)-related protein.	0.598
KFL_000500370	KFL_007880010	A0A1Y1HNR3	A0A1Y1IKS5	26S proteasome regulatory subunit.	DNA helicase; Belongs to the MCM family.	0.466
KFL_000630090	KFL_000250470	A0A1Y1HWC9	A0A1Y1HPN3	BRCT domain-containing protein.	Helicase.	0.948
KFL_000630090	KFL_000450200	A0A1Y1HWC9	A0A1Y1HN56	BRCT domain-containing protein.	DNA repair protein Rad9; Belongs to the rad9 family.	0.938
KFL_000630090	KFL_000500370	A0A1Y1HWC9	A0A1Y1HNR3	BRCT domain-containing protein.	26S proteasome regulatory subunit.	0.902
KFL_000630090	KFL_001160090	A0A1Y1HWC9	A0A1Y1I1D2	BRCT domain-containing protein.	BRCA1-associated RING domain protein 1.	0.888