STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001580180Zinc finger RING-type domain containing protein. (301 aa)    
Predicted Functional Partners:
KFL_003450130
60S ribosomal protein L40.
    
 0.720
KFL_001440120
Ubiquitin/40S ribosomal protein S27a fusion.
    
  0.690
KFL_009650030
E3 ubiquitin-protein ligase.
     
 0.588
KFL_000690290
Ubiquitin-conjugating enzyme E2.
   
  0.573
KFL_000390360
Uncharacterized protein.
   
  0.545
KFL_001800090
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.545
KFL_001880110
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.545
KFL_006300080
Putative Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.545
KFL_005910110
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.545
KFL_000130170
Ubiquitin C.
    
  0.515
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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