KFL_000880200 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_000880200

Ca2+-activated K+ channel Slowpoke, alpha subunit. (1145 aa)

Predicted Functional Partners:

KFL_001330050

0.582

KFL_000870090

0.579

KFL_004490060

0.579

KFL_005150040

0.579

KFL_000070140

0.477

KFL_000130120

0.477

KFL_000130320

0.477

KFL_000710120

0.477

KFL_004810030

0.477

KFL_006180070

0.477

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000070140	KFL_000870090	A0A1Y1HHV2	A0A1Y1HSR4	cAMP-dependent protein kinase regulator.	cAMP cGMP-dependent protein kinase.	0.736
KFL_000070140	KFL_000880200	A0A1Y1HHV2	A0A1Y1HYW4	cAMP-dependent protein kinase regulator.	Ca2+-activated K+ channel Slowpoke, alpha subunit.	0.477
KFL_000070140	KFL_001330050	A0A1Y1HHV2	A0A0U9HKE2	cAMP-dependent protein kinase regulator.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein.	0.858
KFL_000070140	KFL_004490060	A0A1Y1HHV2	A0A1Y1IGP2	cAMP-dependent protein kinase regulator.	cAMP-dependent protein kinase catalytic subunit.	0.736
KFL_000070140	KFL_005150040	A0A1Y1HHV2	A0A1Y1IJR3	cAMP-dependent protein kinase regulator.	Serine/threonine protein kinase.	0.736
KFL_000130120	KFL_000870090	A0A1Y1HIU2	A0A1Y1HSR4	Putative cGMP-dependent serine/threonin protein kinase.	cAMP cGMP-dependent protein kinase.	0.764
KFL_000130120	KFL_000880200	A0A1Y1HIU2	A0A1Y1HYW4	Putative cGMP-dependent serine/threonin protein kinase.	Ca2+-activated K+ channel Slowpoke, alpha subunit.	0.477
KFL_000130120	KFL_001330050	A0A1Y1HIU2	A0A0U9HKE2	Putative cGMP-dependent serine/threonin protein kinase.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein.	0.858
KFL_000130120	KFL_004490060	A0A1Y1HIU2	A0A1Y1IGP2	Putative cGMP-dependent serine/threonin protein kinase.	cAMP-dependent protein kinase catalytic subunit.	0.754
KFL_000130120	KFL_005150040	A0A1Y1HIU2	A0A1Y1IJR3	Putative cGMP-dependent serine/threonin protein kinase.	Serine/threonine protein kinase.	0.766
KFL_000130320	KFL_000870090	A0A1Y1HIW1	A0A1Y1HSR4	Serine/threonine protein kinase.	cAMP cGMP-dependent protein kinase.	0.770
KFL_000130320	KFL_000880200	A0A1Y1HIW1	A0A1Y1HYW4	Serine/threonine protein kinase.	Ca2+-activated K+ channel Slowpoke, alpha subunit.	0.477
KFL_000130320	KFL_001330050	A0A1Y1HIW1	A0A0U9HKE2	Serine/threonine protein kinase.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein.	0.858
KFL_000130320	KFL_004490060	A0A1Y1HIW1	A0A1Y1IGP2	Serine/threonine protein kinase.	cAMP-dependent protein kinase catalytic subunit.	0.758
KFL_000130320	KFL_005150040	A0A1Y1HIW1	A0A1Y1IJR3	Serine/threonine protein kinase.	Serine/threonine protein kinase.	0.774
KFL_000710120	KFL_000870090	A0A1Y1HX43	A0A1Y1HSR4	Serine Threonine protein kinase.	cAMP cGMP-dependent protein kinase.	0.793
KFL_000710120	KFL_000880200	A0A1Y1HX43	A0A1Y1HYW4	Serine Threonine protein kinase.	Ca2+-activated K+ channel Slowpoke, alpha subunit.	0.477
KFL_000710120	KFL_001330050	A0A1Y1HX43	A0A0U9HKE2	Serine Threonine protein kinase.	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein.	0.858
KFL_000710120	KFL_004490060	A0A1Y1HX43	A0A1Y1IGP2	Serine Threonine protein kinase.	cAMP-dependent protein kinase catalytic subunit.	0.764
KFL_000710120	KFL_005150040	A0A1Y1HX43	A0A1Y1IJR3	Serine Threonine protein kinase.	Serine/threonine protein kinase.	0.785