STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001050150Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
KFL_007430040
26S proteasome regulatory subunit N7.
   
   0.716
KFL_001580090
Nuclear pore localisation protein NPL4.
    
   0.709
KFL_001250200
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 
 0.659
KFL_000200400
Proteasome regulatory complex ATPase; Belongs to the AAA ATPase family.
   
   0.657
KFL_000580300
26S proteasome non-ATPase regulatory subunit.
   
   0.647
KFL_000500370
26S proteasome regulatory subunit.
   
   0.643
KFL_003560140
Regulatory particle triple-A ATPase; Belongs to the AAA ATPase family.
   
   0.643
KFL_000430180
26S proteasome regulatory complex ATPase RPT1; Belongs to the AAA ATPase family.
   
   0.641
KFL_000710160
AAA-type ATPase domain containing protein.
   
   0.614
KFL_000900280
26S proteasome subunit RPN8.
   
 
 0.611
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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