STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001050150Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
KFL_003450130
60S ribosomal protein L40.
   
 
 0.449
KFL_001440120
Ubiquitin/40S ribosomal protein S27a fusion.
    
   0.430
KFL_001580090
Nuclear pore localisation protein NPL4.
    
   0.429
KFL_000710160
AAA-type ATPase domain containing protein.
   
   0.427
KFL_007430040
26S proteasome regulatory subunit N7.
   
   0.427
KFL_001250200
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 
 0.420
KFL_000150470
Transitional endoplasmic reticulum ATPase.
    
 
 0.409
KFL_002840050
AAA-type ATPase family protein; Belongs to the AAA ATPase family.
    
 
 0.409
KFL_005100030
AAA+-type ATPase.
    
 
 0.409
KFL_003970030
AAA+-type ATPase; Belongs to the AAA ATPase family.
    
 
 0.409
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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