STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001730230RAB geranylgeranyl transferase alpha subunit. (683 aa)    
Predicted Functional Partners:
KFL_007070030
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.983
KFL_004120100
Rab GDP dissociation inhibito.
   
 0.976
KFL_004750040
Ras-related GTP-binding protein.
    
 0.788
KFL_004900070
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.749
KFL_004170070
Rab family GTPase.
    
 0.742
KFL_000080600
Uncharacterized protein.
    
 0.700
KFL_000150500
Rab family GTPase.
    
 0.700
KFL_000660240
Uncharacterized protein.
    
 0.700
KFL_001270220
Uncharacterized protein.
    
 0.700
KFL_002000050
Rab family GTPase.
    
 0.700
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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