STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001400250Reverse transcriptase. (608 aa)    
Predicted Functional Partners:
KFL_000120020
Uncharacterized protein.
    
  0.507
KFL_004560170
ER-Golgi vesicle-tethering protein/Myosin class II heavy chain.
    
  0.488
KFL_005450070
RPA_C domain-containing protein.
    
  0.488
KFL_001580090
Nuclear pore localisation protein NPL4.
    
  0.451
KFL_008040030
Uncharacterized protein.
    
  0.415
KFL_000570150
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.
    
  0.409
KFL_002490180
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.
    
  0.409
KFL_000180160
Mitochondrial substrate carrier family protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
  0.407
KFL_003230130
dUTPase.
    
  0.407
KFL_011810040
dUTPase.
    
  0.407
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.