STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001500020RTR1-type domain-containing protein. (852 aa)    
Predicted Functional Partners:
KFL_000610160
DNA-directed RNA polymerase II subunit 4.
    
 0.974
KFL_003190150
Non-catalytic subunit of nuclear DNA-dependent RNA polymerases.
    
 0.971
KFL_004750100
DNA-directed RNA polymerase II subunit 11.
    
 0.971
KFL_000170490
DNA-directed RNA polymerase subunit K.
    
 0.964
KFL_002610100
DNA-directed RNA polymerase II subunit 8; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
 0.964
KFL_000530260
Uncharacterized protein.
    
 0.961
KFL_004850090
DNA-directed RNA polymerase II subunit 10.
    
 0.961
KFL_000040070
ARC6 homolog.
    
 0.960
KFL_002030010
DNA-directed RNA polymerase II subunit 7.
    
 0.960
KFL_002560020
DNA-directed RNA polymerase II subunit 5.
    
 0.954
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.