KFL_001260270 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_001260270

RNA polymerase II elongator associated protein. (296 aa)

Predicted Functional Partners:

KFL_002150080

0.904

KFL_008000030

0.856

KFL_000150180

0.838

KFL_001040280

0.803

KFL_000630190

0.784

KFL_004160020

0.784

KFL_009570020

0.784

KFL_006370110

0.783

KFL_009890030

0.783

KFL_000520330

0.780

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000150180	KFL_000520330	A0A1Y1HPM7	A0A1Y1HTM8	Putative protease.	Oxygen-independent coproporphyrinogen III oxidase.	0.958
KFL_000150180	KFL_001260270	A0A1Y1HPM7	A0A1Y1I287	Putative protease.	RNA polymerase II elongator associated protein.	0.838
KFL_000150180	KFL_006370110	A0A1Y1HPM7	A0A1Y1INR3	Putative protease.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.960
KFL_000150180	KFL_008000030	A0A1Y1HPM7	A0A1Y1IN36	Putative protease.	Uncharacterized protein.	0.993
KFL_000150180	KFL_009890030	A0A1Y1HPM7	A0A1Y1IST4	Putative protease.	Elongator complex protein 3.	0.960
KFL_000520330	KFL_000150180	A0A1Y1HTM8	A0A1Y1HPM7	Oxygen-independent coproporphyrinogen III oxidase.	Putative protease.	0.958
KFL_000520330	KFL_001260270	A0A1Y1HTM8	A0A1Y1I287	Oxygen-independent coproporphyrinogen III oxidase.	RNA polymerase II elongator associated protein.	0.780
KFL_000520330	KFL_008000030	A0A1Y1HTM8	A0A1Y1IN36	Oxygen-independent coproporphyrinogen III oxidase.	Uncharacterized protein.	0.934
KFL_000630190	KFL_001260270	A0A1Y1HWD7	A0A1Y1I287	Seryl-tRNA synthetase class IIa.	RNA polymerase II elongator associated protein.	0.784
KFL_000630190	KFL_004160020	A0A1Y1HWD7	A0A1Y1IFN2	Seryl-tRNA synthetase class IIa.	Serine--tRNA ligase, chloroplast or mitochondrial.	0.815
KFL_001040280	KFL_001260270	A0A1Y1HUB6	A0A1Y1I287	RNA-binding protein NOB1.	RNA polymerase II elongator associated protein.	0.803
KFL_001260270	KFL_000150180	A0A1Y1I287	A0A1Y1HPM7	RNA polymerase II elongator associated protein.	Putative protease.	0.838
KFL_001260270	KFL_000520330	A0A1Y1I287	A0A1Y1HTM8	RNA polymerase II elongator associated protein.	Oxygen-independent coproporphyrinogen III oxidase.	0.780
KFL_001260270	KFL_000630190	A0A1Y1I287	A0A1Y1HWD7	RNA polymerase II elongator associated protein.	Seryl-tRNA synthetase class IIa.	0.784
KFL_001260270	KFL_001040280	A0A1Y1I287	A0A1Y1HUB6	RNA polymerase II elongator associated protein.	RNA-binding protein NOB1.	0.803
KFL_001260270	KFL_002150080	A0A1Y1I287	A0A1Y1I4T5	RNA polymerase II elongator associated protein.	Signal peptidase I.	0.904
KFL_001260270	KFL_004160020	A0A1Y1I287	A0A1Y1IFN2	RNA polymerase II elongator associated protein.	Serine--tRNA ligase, chloroplast or mitochondrial.	0.784
KFL_001260270	KFL_006370110	A0A1Y1I287	A0A1Y1INR3	RNA polymerase II elongator associated protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.783
KFL_001260270	KFL_008000030	A0A1Y1I287	A0A1Y1IN36	RNA polymerase II elongator associated protein.	Uncharacterized protein.	0.856
KFL_001260270	KFL_009570020	A0A1Y1I287	A0A1Y1IRW7	RNA polymerase II elongator associated protein.	Seryl-tRNA synthetase class IIa.	0.784