STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001470280Uncharacterized protein. (176 aa)    
Predicted Functional Partners:
KFL_007540020
Putative retrotransposon protein.
  
     0.535
KFL_005910030
Uncharacterized protein.
  
     0.535
KFL_007320070
Putative transposon-encoded protein with retrovirus polyprotein and reverse transcriptase domain.
  
     0.534
KFL_007470065
Integrase catalytic domain-containing protein.
  
     0.533
KFL_005690010
Uncharacterized protein.
  
     0.532
KFL_007470020
Putative retrotransposon protein.
  
     0.531
KFL_015570020
Integrase catalytic domain-containing protein.
  
     0.527
KFL_000540030
Integrase catalytic domain-containing protein.
  
     0.526
KFL_008720020
RT_RNaseH_2 domain-containing protein.
  
     0.525
KFL_011180020
Putative retrotransposon protein.
  
     0.524
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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