STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_002300150JmjC domain-containing protein. (1072 aa)    
Predicted Functional Partners:
KFL_000550100
SCF ubiquitin ligase; Belongs to the SKP1 family.
   
 0.999
KFL_007740060
Skp1 domain-containing protein; Belongs to the SKP1 family.
   
 0.999
KFL_003020020
Cullin family protein; Belongs to the cullin family.
    
 0.996
KFL_000860050
Cullin 3; Belongs to the cullin family.
    
 0.996
KFL_001620090
Cullin-associated and neddylation-dissociated (CAND1) homolog.
    
 0.981
KFL_000710250
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
    
  0.980
KFL_001250120
NEDD8-activating complex catalytic component UBA3.
    
  0.980
KFL_001550040
Phosphatidylinositol-4-Kinase gamma.
    
 0.908
KFL_000140150
RING-box protein 1.
    
 0.895
KFL_005910100
Purtative Rad23 UV excision repair protein.
    
 0.881
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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