STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_002610010Transcription initiation factor TFIID. (411 aa)    
Predicted Functional Partners:
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
   
 
 0.701
KFL_003940030
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.653
KFL_006730070
Transcription initiation factor TFIID subunit.
    
 
 0.643
KFL_008430030
Transcription factor E2F/dimerization partner.
    
   0.525
KFL_003190060
RuvB-like helicase; Belongs to the RuvB family.
 
  
 
 0.510
KFL_005600070
SANT_DAMP1_like domain-containing protein.
    
 
 0.495
KFL_009400030
Histone H3.
  
 
 
 0.491
KFL_000530050
Putative histones H3 and H4.
  
 
 
 0.490
KFL_001380170
Transcription initiation factor TFIID subunit 1.
    
 
0.486
KFL_010090020
Histone H3.
  
 
 
 0.485
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.