STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_003200020Uncharacterized protein. (952 aa)    
Predicted Functional Partners:
KFL_007640030
Poly (ADP-ribose) glycohydrolase.
    
 0.808
KFL_001460120
Transglutaminase-like.
    
  0.733
KFL_004050070
Macro domain-containing protein.
   
 
 0.685
KFL_004560170
ER-Golgi vesicle-tethering protein/Myosin class II heavy chain.
    
  0.663
KFL_005450070
RPA_C domain-containing protein.
    
  0.663
KFL_000070060
DNA recombinational repair protein BRCA2.
    
 0.658
KFL_000610170
Putative DNA repair protein XPGC.
   
 0.653
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.653
KFL_009620020
DNA repair protein XPGC.
   
 0.653
KFL_000750280
WD40 protein.
    
 0.651
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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