STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_003220140MYND-type domain-containing protein. (405 aa)    
Predicted Functional Partners:
KFL_004000010
WD_REPEATS_REGION domain-containing protein.
    
 0.691
KFL_003940030
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.689
KFL_000850310
VEFS-Box of polycomb protein.
    
 0.677
KFL_001250270
Ketose-bisphosphate aldolase class-II family protein.
    
  0.666
KFL_000830350
B30.2/SPRY domain-containing protein.
    
 0.639
KFL_007620040
WD40 repeat protein.
    
 0.639
KFL_003450130
60S ribosomal protein L40.
    
  0.597
KFL_001070200
Histone H2A; Belongs to the histone H2A family.
    
 0.593
KFL_000580300
26S proteasome non-ATPase regulatory subunit.
    
  0.577
KFL_000370400
Nucleosome assembly factor.
    
  0.564
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.