STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004420080Histone H3. (170 aa)    
Predicted Functional Partners:
KFL_000080070
TONSOKU.
    
 0.994
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
   
 0.924
KFL_003940030
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.902
KFL_011820010
HMG (High mobility group) box protein.
   
 0.852
KFL_000180120
PHD finger family protein.
    
 
 0.847
KFL_001850110
PHD finger family protein.
    
 
 0.847
KFL_002320110
PHD finger family protein.
    
 
 0.847
KFL_002300150
JmjC domain-containing protein.
    
 0.838
KFL_001070200
Histone H2A; Belongs to the histone H2A family.
   
 0.834
KFL_001060020
Histone H2B; Belongs to the histone H2B family.
  
 0.821
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.