STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_003400020Aminotransferase. (484 aa)    
Predicted Functional Partners:
KFL_010220010
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
 
 0.957
KFL_004630070
Diaminopimelate epimerase.
  
 0.939
KFL_007370030
Isochorismate synthase.
   
 0.920
KFL_002750030
Diaminopimelate decarboxylase.
  
 
 0.789
KFL_003090050
Aspartokinase; Belongs to the aspartokinase family.
  
 0.767
KFL_000320370
Malate dehydrogenase (NADP+).
  
 0.756
KFL_000180510
Aspartate kinase and homoserine dehydrogenase.
  
 0.746
KFL_007760050
Homoserine dehydrogenase.
  
 0.746
KFL_001720060
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
  
 
 0.733
KFL_000460150
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.726
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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