STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004040120Pumilio RNA-binding repeat proteins. (774 aa)    
Predicted Functional Partners:
KFL_000940080
Uncharacterized protein.
   
 
 0.996
KFL_000470160
Brix domain-containing protein.
   
 
 0.993
KFL_002370010
Brix domain-containing protein.
   
 
 0.989
KFL_009890040
Nucleolar protein 4.
   
   0.985
KFL_001210010
Uncharacterized protein.
   
 
 0.977
KFL_008690020
RRM domain-containing protein.
   
 
 0.975
KFL_000630310
GTP-binding protein CRFG/NOG1.
   
 
 0.969
KFL_002450010
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.969
KFL_002910060
Ribosome biogenesis protein.
   
   0.967
KFL_000850420
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.965
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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