STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_005130100RNA helicase family protein. (732 aa)    
Predicted Functional Partners:
KFL_009860030
Sas10/Utp3/C1D family protein.
   
  0.881
KFL_002410110
U3 small nucleolar RNA-associated protein 22.
   
  0.876
KFL_006700030
WD40 repeat protein.
   
 0.874
KFL_006680030
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein.
   
  0.872
KFL_001030030
Uncharacterized protein.
 
 
  0.868
KFL_000770280
ATP-dependent RNA helicase DHX8/PRP22.
  
  
 
0.866
KFL_000200480
ATP-dependent RNA helicase.
  
  
 
0.862
KFL_004330080
DEAH-box RNA helicase.
  
0.859
KFL_003750110
Pre-mRNA-processing factor 17.
   
 0.857
KFL_000610120
Pre-mRNA-splicing factor.
    
 0.853
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.