STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004340060Membrane-associated Zn-dependent protease. (608 aa)    
Predicted Functional Partners:
KFL_009770020
Sister chromatid cohesion protein.
   
    0.511
KFL_001110220
PHD-type domain-containing protein.
   
   0.506
KFL_001470050
Putative SNF2 family N-terminal domain containing protein.
   
   0.506
KFL_001970090
Uncharacterized protein.
   
    0.453
KFL_000370400
Nucleosome assembly factor.
    
 
 0.445
KFL_002090210
WD_REPEATS_REGION domain-containing protein.
    
 
 0.445
KFL_005230070
Nucleosome remodeling factor subunit CAF1/NURF55/MSI1.
    
 
 0.445
KFL_009950020
WD_REPEATS_REGION domain-containing protein.
    
 
 0.445
KFL_000300270
Putative SNF2 family N-terminal domain containing protein.
   
 
 0.436
KFL_000280050
Uncharacterized protein.
   
 
 0.436
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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