STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_003450050Acetamidase/formamidase. (1226 aa)    
Predicted Functional Partners:
KFL_004860050
Ipi1_N domain-containing protein.
    
 0.698
KFL_003580080
Uncharacterized conserved membrane protein.
   
 0.655
KFL_002400230
WD_REPEATS_REGION domain-containing protein.
   
 0.655
KFL_001360090
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.644
KFL_000860350
Uncharacterized protein.
    
 0.636
KFL_002200130
Uncharacterized protein.
    
 0.621
KFL_003630120
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
  0.576
KFL_000140610
Uncharacterized protein.
    
  0.572
KFL_000390230
CLP1_P domain-containing protein.
    
  0.568
KFL_008450030
Uncharacterized protein.
    
 0.557
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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