STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_006060060AAA family ATPase; Belongs to the AAA ATPase family. (815 aa)    
Predicted Functional Partners:
KFL_001580090
Nuclear pore localisation protein NPL4.
   
 0.937
KFL_000200510
UBX domain-containing protein.
   
 0.921
KFL_000970310
UBX domain-containing protein 1.
   
 0.910
KFL_005030020
UBA domain-containing protein.
    
 0.896
KFL_005360060
UBX domain-containing protein 6.
    
 0.896
KFL_002040080
Protein OS-9.
    
 0.862
KFL_004460010
UBX domain-containing protein.
    
 0.855
KFL_000870100
OTU-like cysteine protease.
   
 0.854
KFL_000230040
Ataxin-3.
   
 0.845
KFL_001040200
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.845
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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