STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_006380060Histone deacetylase complex catalytic component RPD3. (697 aa)    
Predicted Functional Partners:
KFL_011820010
HMG (High mobility group) box protein.
   
 0.996
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
    
 0.994
KFL_007120040
Hypothetical virus protein.
   
 0.970
KFL_002210090
MRG domain-containing protein.
   
 0.961
KFL_003110140
Paired amphipathic helix protein.
   
 0.951
KFL_003020130
Retinoblastoma-related protein.
   
 0.944
KFL_001070200
Histone H2A; Belongs to the histone H2A family.
   
 0.928
KFL_001250160
WD-40 protein involved in histone deacetylation.
   
 0.911
KFL_003840100
WD_REPEATS_REGION domain-containing protein.
   
 0.911
KFL_000300070
Putative PHD domain containing homeodomain protein.
   
 
 0.908
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.