STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004830070DUF4346 domain-containing protein. (143 aa)    
Predicted Functional Partners:
KFL_001330140
RNA helicase family protein.
    
 0.909
KFL_001210050
RNA helicase.
    
 0.858
KFL_002410110
U3 small nucleolar RNA-associated protein 22.
    
 
 0.822
KFL_008450020
G-patch domain-containing protein.
    
 
 0.822
KFL_002250060
Uncharacterized protein.
   
   0.818
KFL_002500190
U3 small nucleolar RNA-associated protein 6.
    
 
 0.817
KFL_001220190
MIF4G-like domain containing protein.
    
   0.816
KFL_000440290
Protein with digestive organ expansion factor domain.
    
   0.816
KFL_000830200
Uncharacterized protein.
    
   0.816
KFL_001030030
Uncharacterized protein.
    
   0.816
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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