STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_005460070Uncharacterized protein. (1473 aa)    
Predicted Functional Partners:
KFL_011820010
HMG (High mobility group) box protein.
   
 0.772
KFL_000480170
Actin-related protein-Arp5p; Belongs to the actin family.
    
 0.707
KFL_003190060
RuvB-like helicase; Belongs to the RuvB family.
    
 0.707
KFL_000170490
DNA-directed RNA polymerase subunit K.
    
 0.693
KFL_006980030
DNA ligase.
   
 0.688
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
   
0.687
KFL_003640050
YL1_C domain-containing protein.
    
 0.686
KFL_000610160
DNA-directed RNA polymerase II subunit 4.
    
 0.676
KFL_002610100
DNA-directed RNA polymerase II subunit 8; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.673
KFL_004850090
DNA-directed RNA polymerase II subunit 10.
    
  0.665
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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