STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_005700080Transposon-encoded protein with ribonuclease H-like and retrovirus zinc finger-like domains. (877 aa)    
Predicted Functional Partners:
KFL_012360010
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.590
KFL_010900020
Putative retrotransposon protein.
 
     0.566
KFL_013870020
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.530
KFL_014650010
Uncharacterized protein.
 
     0.520
KFL_011980020
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.519
KFL_004340120
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.517
KFL_017460010
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.517
KFL_000480020
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.516
KFL_018020010
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.516
KFL_014650020
Uncharacterized protein.
  
     0.515
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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