STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_005950040Leucine rich repeat/RNI-like superfamily protein. (523 aa)    
Predicted Functional Partners:
KFL_000140150
RING-box protein 1.
    
 0.733
KFL_000550100
SCF ubiquitin ligase; Belongs to the SKP1 family.
   
 0.716
KFL_007740060
Skp1 domain-containing protein; Belongs to the SKP1 family.
   
 0.716
KFL_003020020
Cullin family protein; Belongs to the cullin family.
    
 0.706
KFL_000860050
Cullin 3; Belongs to the cullin family.
    
 0.706
KFL_002750050
Transcription elongation factor B, polypeptide 1; Belongs to the SKP1 family.
    
 0.637
KFL_001440120
Ubiquitin/40S ribosomal protein S27a fusion.
    
  0.605
KFL_001620090
Cullin-associated and neddylation-dissociated (CAND1) homolog.
    
 0.587
KFL_005600010
Cyclin B and related kinase-activating proteins; Belongs to the cyclin family.
    
 0.561
KFL_000170340
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.510
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.