STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_010030040DDX42, SF3B125. (943 aa)    
Predicted Functional Partners:
KFL_000800170
Splicing factor.
   
 0.999
KFL_001640020
Splicing factor 3B subunit 2.
   
 0.989
KFL_000520170
Pre-mRNA branch site protein p14.
    
  0.982
KFL_000040310
PHF5-like protein.
    
 0.981
KFL_000770080
Splicing factor 3B subunit 3.
   
 0.979
KFL_003850030
Cleavage and polyadenylation specificity factor.
   
 0.979
KFL_000220510
Splicing factor 3A subunit 2.
    
  0.967
KFL_000980020
Splicing factor 3B subunit 4.
    
 0.925
KFL_000570050
RNA recognition motif containing protein.
    
 0.925
KFL_000640240
Splicing factor subunit; Belongs to the SF3B5 family.
    
  0.911
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.