KFL_006870090 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_006870090

Galactose oxidase/kelch repeat superfamily protein. (505 aa)

Predicted Functional Partners:

KFL_003020020

0.646

KFL_000860050

0.646

KFL_000170340

0.606

KFL_000140150

0.565

KFL_000710250

0.552

KFL_005120010

0.549

KFL_001050100

0.417

KFL_004860070

0.404

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000140150	KFL_000170340	A0A1Y1HPF6	A0A1Y1HS89	RING-box protein 1.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.981
KFL_000140150	KFL_000710250	A0A1Y1HPF6	A0A1Y1HR69	RING-box protein 1.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.817
KFL_000140150	KFL_000860050	A0A1Y1HPF6	A0A1Y1HU24	RING-box protein 1.	Cullin 3; Belongs to the cullin family.	0.984
KFL_000140150	KFL_001050100	A0A1Y1HPF6	A0A1Y1I0E3	RING-box protein 1.	MPN domain-containing protein.	0.953
KFL_000140150	KFL_003020020	A0A1Y1HPF6	A0A0U9HL22	RING-box protein 1.	Cullin family protein; Belongs to the cullin family.	0.987
KFL_000140150	KFL_004860070	A0A1Y1HPF6	A0A1Y1IHV8	RING-box protein 1.	Von Hippel-Lindau disease tumour suppressor beta/alpha domain.	0.987
KFL_000140150	KFL_005120010	A0A1Y1HPF6	A0A1Y1IEJ2	RING-box protein 1.	Uncharacterized protein.	0.667
KFL_000140150	KFL_006870090	A0A1Y1HPF6	A0A1Y1IRQ3	RING-box protein 1.	Galactose oxidase/kelch repeat superfamily protein.	0.565
KFL_000170340	KFL_000140150	A0A1Y1HS89	A0A1Y1HPF6	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	RING-box protein 1.	0.981
KFL_000170340	KFL_000710250	A0A1Y1HS89	A0A1Y1HR69	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.979
KFL_000170340	KFL_000860050	A0A1Y1HS89	A0A1Y1HU24	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Cullin 3; Belongs to the cullin family.	0.953
KFL_000170340	KFL_001050100	A0A1Y1HS89	A0A1Y1I0E3	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	MPN domain-containing protein.	0.711
KFL_000170340	KFL_003020020	A0A1Y1HS89	A0A0U9HL22	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Cullin family protein; Belongs to the cullin family.	0.953
KFL_000170340	KFL_005120010	A0A1Y1HS89	A0A1Y1IEJ2	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.608
KFL_000170340	KFL_006870090	A0A1Y1HS89	A0A1Y1IRQ3	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Galactose oxidase/kelch repeat superfamily protein.	0.606
KFL_000710250	KFL_000140150	A0A1Y1HR69	A0A1Y1HPF6	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	RING-box protein 1.	0.817
KFL_000710250	KFL_000170340	A0A1Y1HR69	A0A1Y1HS89	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.979
KFL_000710250	KFL_000860050	A0A1Y1HR69	A0A1Y1HU24	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	Cullin 3; Belongs to the cullin family.	0.801
KFL_000710250	KFL_001050100	A0A1Y1HR69	A0A1Y1I0E3	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	MPN domain-containing protein.	0.762
KFL_000710250	KFL_003020020	A0A1Y1HR69	A0A0U9HL22	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	Cullin family protein; Belongs to the cullin family.	0.801