STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_015360015Integrase catalytic domain-containing protein. (603 aa)    
Predicted Functional Partners:
KFL_005660010
Transposon-encoded protein with ribonuclease H-like integrase domains.
 
     0.528
KFL_016330020
Putative transposon-encoded protein with Ribonuclease H-like domain and integrase-like domain.
 
     0.526
KFL_015360020
Gag_pre-integrs domain-containing protein.
  
     0.520
KFL_000120020
Uncharacterized protein.
    
  0.507
KFL_004560170
ER-Golgi vesicle-tethering protein/Myosin class II heavy chain.
    
  0.488
KFL_005450070
RPA_C domain-containing protein.
    
  0.488
KFL_011220025
Gag_pre-integrs domain-containing protein.
  
     0.471
KFL_001580090
Nuclear pore localisation protein NPL4.
    
  0.451
KFL_010700040
Gag_pre-integrs domain-containing protein.
  
     0.443
KFL_010020010
Gag_pre-integrs domain-containing protein.
  
     0.437
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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