STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_009810010F-box and WD-40 protein. (788 aa)    
Predicted Functional Partners:
KFL_000140150
RING-box protein 1.
    
 0.876
KFL_000550100
SCF ubiquitin ligase; Belongs to the SKP1 family.
    
 0.846
KFL_007740060
Skp1 domain-containing protein; Belongs to the SKP1 family.
    
 0.846
KFL_003020020
Cullin family protein; Belongs to the cullin family.
    
 0.834
KFL_000860050
Cullin 3; Belongs to the cullin family.
    
 0.834
KFL_003450130
60S ribosomal protein L40.
    
  0.804
KFL_000460010
Pre-initiation complex subunit CDC6.
    
 0.768
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
    
  0.761
KFL_008730040
Mitochondrial ribosomal protein L2.
    
  0.761
KFL_007790020
60S ribosomal protein L8.
    
  0.707
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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