STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GYO_0816Transcriptional regulator, MarR family. (153 aa)    
Predicted Functional Partners:
GYO_0817
Mmpl family.
 
    0.938
GYO_1273
Hypothetical protein.
      
 0.752
GYO_4037
Conserved domain protein; Belongs to the UPF0337 (CsbD) family.
  
     0.711
GYO_1129
Membrane protein, putative.
  
     0.671
GYO_1650
Peptidase propeptide and ypeb domain protein.
  
     0.662
GYO_4513
Conserved hypothetical protein.
  
     0.624
GYO_0601
YcnC.
  
     0.584
GYO_0584
YclG.
  
     0.565
spsD
Spore coat polysaccharide biosynthesis protein and putative acetyltransferase, GNAT family, SpsD.
  
    0.518
GYO_0815
DNA damage inducible nuclease inhibitor DinB.
     
 0.517
Your Current Organism:
Bacillus subtilis spizizenii
NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.