STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GYO_4371ABC transporter ATP-binding protein YxdL. (257 aa)    
Predicted Functional Partners:
yxdK
Sensor protein YxdK.
 
 
 
 0.969
GYO_4370
ABC transporter permease protein YxdM.
 
 
 0.963
yxdJ
Sensory transduction protein YxdJ.
 
   
 0.943
GYO_1773
YknZ.
 
 0.941
GYO_3635
ABC transporter.
 
 0.920
GYO_3804
Bacitracin export ATP-binding protein BceA.
  
  
 
0.902
GYO_3803
Antimicrobial peptide ABC transporter permease.
 
 
 0.834
GYO_3288
Bacitracin export permease protein BceB.
 
 
 0.818
GYO_4369
Protein YxeA.
  
    0.775
GYO_3292
YtrF.
 
 0.759
Your Current Organism:
Bacillus subtilis spizizenii
NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.