STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_03023Putative RNA-binding protein RbpF. (80 aa)    
Predicted Functional Partners:
AAWM_11104
Cleavage stimulation factor subunit 2.
  
 
 0.830
AAWM_08030
Pre-mRNA-splicing factor srp2.
    
 0.822
AAWM_10920
Nuclear cap-binding protein subunit 1.
    
 0.798
AAWM_11038
Nuclear cap-binding protein subunit 2.
    
 0.794
AAWM_05175
Probable U2 small nuclear ribonucleoprotein B.
   
 0.769
AAWM_00777
Uncharacterized RNA-binding protein C660.15.
  
 
0.761
AAWM_00241
Uncharacterized RNA-binding protein C25G10.01.
  
0.757
AAWM_03939
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.730
AAWM_09080
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
  0.729
AAWM_01010
DNA-directed RNA polymerase II subunit rpb4.
    
 0.727
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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