STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_04418Helicase SEN1. (2105 aa)    
Predicted Functional Partners:
AAWM_02459
Rpb7-binding protein seb1.
   
 
 0.953
AAWM_09019
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.862
AAWM_08068
Uncharacterized RNA-binding protein C3H8.09c.
    
 
 0.815
AAWM_06661
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 
 0.753
AAWM_02441
Double-strand-specific pac1 ribonuclease.
   
 
 0.698
AAWM_00225
Regulator of nonsense transcripts 2.
   
  0.695
AAWM_03724
Sister chromatid cohesion protein.
   
    0.693
AAWM_11038
Nuclear cap-binding protein subunit 2.
    
 
 0.673
AAWM_05633
Regulator of nonsense transcripts 1 homolog.
    
0.659
AAWM_04112
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.587
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.