STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_04428Exosome complex component rrp43. (403 aa)    
Predicted Functional Partners:
AAWM_00473
Exosome complex component RRP40.
   
 0.999
AAWM_00595
Exosome complex component ski6.
   
 0.999
AAWM_02051
Exosome complex component CSL4.
   
 0.999
AAWM_11085
Exosome complex component rrp45.
   
 0.999
AAWM_01697
Exosome complex component RRP42.
   
 0.998
AAWM_03840
Exosome complex component rrp4.
   
 0.998
AAWM_07067
Exosome complex component RRP46.
   
 0.998
AAWM_09412
Exosome complex exonuclease dis3; Belongs to the RNR ribonuclease family.
   
 0.996
AAWM_03779
Nuclear nucleic acid-binding protein C1D.
   
 0.994
AAWM_03355
HBS1-like protein.
    
 0.993
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.