STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_05091Pre-mRNA-splicing factor SPF27 homolog. (216 aa)    
Predicted Functional Partners:
AAWM_00829
Pre-mRNA-splicing factor cef1.
   
 0.998
AAWM_02054
Pre-mRNA-processing factor 19.
   
 0.998
AAWM_05401
Pre-mRNA-splicing factor prp46.
   
 0.997
AAWM_11086
Pre-mRNA-splicing factor cwc15.
   
 0.993
AAWM_00653
Pre-mRNA-processing factor 17.
   
 
 0.982
AAWM_00531
Pre-mRNA-processing-splicing factor 8.
    
 
 0.977
AAWM_03940
Beta-catenin-like protein 1 homolog.
   
 0.976
AAWM_07661
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.970
AAWM_07534
Pre-mRNA-splicing factor cwc2.
   
 
 0.967
AAWM_10925
Spliceosome-associated protein 49.
   
   0.957
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.