STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_05074ATP-dependent rRNA helicase rrp3; Belongs to the DEAD box helicase family. (467 aa)    
Predicted Functional Partners:
AAWM_05445
Something about silencing protein 10.
   
  0.996
AAWM_06031
Uncharacterized protein C18B11.06.
   
 0.990
AAWM_01723
Probable U3 small nucleolar RNA-associated protein 7.
   
 0.980
AAWM_01600
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.977
AAWM_03719
Pre-rRNA-processing protein esf1.
   
 
 0.977
AAWM_09166
ATP-dependent RNA helicase rok1.
  
0.975
AAWM_10427
rRNA biogenesis protein rrp5.
   
 0.975
AAWM_07685
Probable nucleolar complex protein 14.
   
 0.967
AAWM_05068
Protein sof1.
   
  0.952
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.947
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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