STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (379 aa)    
Predicted Functional Partners:
AAWM_02646
EKC/KEOPS complex subunit bud32.
 
      0.716
AAWM_03375
Pre-rRNA-processing protein TSR2.
   
  
 0.685
AAWM_05187
18S rRNA (Guanine(1575)-N(7))-methyltransferase.
   
  
 0.616
AAWM_02500
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  
 0.575
AAWM_00972
tRNA-dihydrouridine(20) synthase.
   
  
 0.544
AAWM_09179
tRNA-dihydrouridine(16/17) synthase.
   
  
 0.533
AAWM_07555
Protein LTV1.
   
  
 0.520
AAWM_03824
Ribosomal RNA small subunit methyltransferase NEP1.
   
  
 0.516
AAWM_03373
Ribosome biogenesis protein enp2 homolog.
   
  
 0.509
AAWM_02173
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.507
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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