STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_07598E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family. (168 aa)    
Predicted Functional Partners:
AAWM_00802
JmjC domain-containing histone demethylation protein 1.
   
 0.999
AAWM_05622
Cullin-1; Belongs to the cullin family.
 
  
 0.997
AAWM_05955
Cell division control protein 4.
    
 0.997
AAWM_01492
Probable E3 ubiquitin ligase complex SCF subunit sconB.
    
 0.996
AAWM_07624
E3 ubiquitin-protein ligase RBX1.
   
 0.992
AAWM_04975
SCF E3 ubiquitin ligase complex F-box protein grrA.
 
 
 0.984
AAWM_01541
F-box/WD repeat-containing protein 7.
    
 0.972
AAWM_11117
F-box protein pof7.
    
 0.967
AAWM_06443
Polyubiquitin.
   
 0.960
AAWM_00741
F-box protein pof12.
    
 0.955
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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