STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_09226ATP-dependent RNA helicase dbp6. (861 aa)    
Predicted Functional Partners:
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.934
AAWM_05445
Something about silencing protein 10.
   
  0.891
AAWM_03872
U3 small nucleolar RNA-associated protein 22.
   
  0.873
AAWM_09673
Multiple RNA-binding domain-containing protein 1.
   
   0.872
AAWM_05650
Nucleolar pre-ribosomal-associated protein 2.
   
 
 0.867
AAWM_02133
Uncharacterized protein C14G10.02.
   
 
 0.862
AAWM_10838
Putative ATP-dependent RNA helicase PB1A10.06c.
   
 0.861
AAWM_01479
ATP-dependent RNA helicase dbp9.
  
 
0.855
AAWM_09166
ATP-dependent RNA helicase rok1.
  
 
0.855
AAWM_05856
U3 small nucleolar RNA-associated protein 10.
   
  0.854
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
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