STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAWM_10943Pre-mRNA-splicing factor srp1. (222 aa)    
Predicted Functional Partners:
AAWM_11038
Nuclear cap-binding protein subunit 2.
    
 0.900
AAWM_08097
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
   
 0.892
AAWM_09645
mRNA export factor mex67.
   
 0.887
AAWM_10920
Nuclear cap-binding protein subunit 1.
    
 0.887
AAWM_03066
Pre-mRNA polyadenylation factor fip1.
    
 0.880
AAWM_02033
mRNA export protein mlo3.
   
 0.879
AAWM_00146
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.876
AAWM_03404
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.876
AAWM_07764
Small nuclear ribonucleoprotein G.
   
 0.876
AAWM_07708
mRNA cleavage and polyadenylation specificity factor complex subunit pta1.
    
 0.869
Your Current Organism:
Aspergillus awamori
NCBI taxonomy Id: 105351
Other names: A. awamori, ATCC 16877, Aspergillus awamorii, Aspergillus niger var. awamori, Aspergillus niger var. awamorii, CBS 557.65, ITEM 4509
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.