STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01590.1Hypothetical protein; KEGG: mpo:Mpop_3054 3.7e-11 DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon. (106 aa)    
Predicted Functional Partners:
EHL97542.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.991
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
 0.990
EHL95483.1
KEGG: gdi:GDI_2395 7.2e-71 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.
    
 0.951
dnaE2
DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
    
 0.920
EHM00059.1
KEGG: gbe:GbCGDNIH1_1280 0. dnaE; DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97.
    
 0.920
EHL98953.1
KEGG: gbe:GbCGDNIH1_2203 1.8e-49 DNA polymerase III subunit chi K02339.
   
 0.895
EHL97478.1
Hypothetical protein; KEGG: mag:amb3000 1.1e-32 DNA polymerase III, alpha subunit; K02337 DNA polymerase III subunit alpha; Psort location: CytoplasmicMembrane, score: 8.16; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
    
 0.838
rpmD
Ribosomal protein L30; KEGG: apb:SAR116_2409 2.7e-16 ribosomal protein L30 K02907.
   
  0.826
EHL97477.1
Hypothetical protein; KEGG: rpd:RPD_1903 6.7e-07 dnaE2; error-prone DNA polymerase K02337; Psort location: Cytoplasmic, score: 7.50.
    
 0.805
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
  0.782
Your Current Organism:
Acetobacteraceae bacterium AT5844
NCBI taxonomy Id: 1054213
Other names: A. bacterium AT-5844, Acetobacteraceae bacterium AT-5844
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