STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01057.1KEGG: hel:HELO_3965 4.1e-29 auxin efflux carrier; Psort location: CytoplasmicMembrane, score: 10.00. (311 aa)    
Predicted Functional Partners:
EHM00994.1
KEGG: cse:Cseg_1074 2.8e-284 malate dehydrogenase K00029; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.757
EHL95475.1
Putative malate dehydrogenase; KEGG: rce:RC1_3260 1.2e-272 tme; malic enzyme K00029; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.757
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.697
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.687
EHM01060.1
Transglycosylase SLT domain protein; KEGG: azl:AZL_013940 1.1e-108 hypothetical protein; K08309 soluble lytic murein transglycosylase.
       0.454
EHM01061.1
Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
       0.454
EHM01062.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 9.6e-21 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
       0.454
EHM01063.1
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.438
Your Current Organism:
Acetobacteraceae bacterium AT5844
NCBI taxonomy Id: 1054213
Other names: A. bacterium AT-5844, Acetobacteraceae bacterium AT-5844
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