EHL96094.1 protein (Acetobacteraceae bacterium AT5844)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHL96094.1

Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (337 aa)

Predicted Functional Partners:

EHM02865.1

0.609

glgB

0.609

EHM02868.1

0.601

EHM02058.1

0.576

EHL96095.1

0.522

EHL96096.1

0.505

EHL96097.1

0.505

EHL96098.1

0.505

EHL96359.1

0.459

EHM00046.1

0.416

Your Current Organism:

Acetobacteraceae bacterium AT5844

NCBI taxonomy Id: 1054213
Other names: A. bacterium AT-5844, Acetobacteraceae bacterium AT-5844

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHL96094.1	EHL96095.1	HMPREF9946_04990	HMPREF9946_04991	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.522
EHL96094.1	EHL96096.1	HMPREF9946_04990	HMPREF9946_04992	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	0.505
EHL96094.1	EHL96097.1	HMPREF9946_04990	HMPREF9946_04993	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	ABC transporter, permease protein; KEGG: lwe:lwe1439 1.2e-28 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.505
EHL96094.1	EHL96098.1	HMPREF9946_04990	HMPREF9946_04994	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	ABC transporter, substrate-binding protein, QAT family; KEGG: cvi:CV_4392 3.3e-82 ABC transporter K05845; Psort location: CytoplasmicMembrane, score: 9.51.	0.505
EHL96094.1	EHL96359.1	HMPREF9946_04990	HMPREF9946_04827	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rru:Rru_A3102 2.7e-71 sugar transferase; Psort location: CytoplasmicMembrane, score: 10.00.	0.459
EHL96094.1	EHM00046.1	HMPREF9946_04990	HMPREF9946_02764	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: rlg:Rleg_1272 6.8e-130 dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase; Psort location: Cytoplasmic, score: 7.50; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.416
EHL96094.1	EHM02058.1	HMPREF9946_04990	HMPREF9946_01514	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: acr:Acry_0548 5.8e-172 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; K00971 mannose-1-phosphate guanylyltransferase K01809; Psort location: Cytoplasmic, score: 7.50.	0.576
EHL96094.1	EHM02865.1	HMPREF9946_04990	HMPREF9946_00700	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: gbe:GbCGDNIH1_0749 1.8e-161 malto-oligosyltrehalose trehalohydrolase K01236; Psort location: Cytoplasmic, score: 9.97.	0.609
EHL96094.1	EHM02868.1	HMPREF9946_04990	HMPREF9946_00703	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Maltose alpha-D-glucosyltransferase; KEGG: gbe:GbCGDNIH1_0751 0. phosphotransferase family protein K05343; Psort location: Cytoplasmic, score: 9.97.	0.601
EHL96094.1	glgB	HMPREF9946_04990	HMPREF9946_00702	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.609
EHL96095.1	EHL96094.1	HMPREF9946_04991	HMPREF9946_04990	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.522
EHL96095.1	EHL96096.1	HMPREF9946_04991	HMPREF9946_04992	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	0.998
EHL96095.1	EHL96097.1	HMPREF9946_04991	HMPREF9946_04993	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: lwe:lwe1439 1.2e-28 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.977
EHL96095.1	EHL96098.1	HMPREF9946_04991	HMPREF9946_04994	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, substrate-binding protein, QAT family; KEGG: cvi:CV_4392 3.3e-82 ABC transporter K05845; Psort location: CytoplasmicMembrane, score: 9.51.	0.999
EHL96096.1	EHL96094.1	HMPREF9946_04992	HMPREF9946_04990	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.505
EHL96096.1	EHL96095.1	HMPREF9946_04992	HMPREF9946_04991	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
EHL96096.1	EHL96097.1	HMPREF9946_04992	HMPREF9946_04993	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, permease protein; KEGG: lwe:lwe1439 1.2e-28 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
EHL96096.1	EHL96098.1	HMPREF9946_04992	HMPREF9946_04994	Choline ABC transporter, ATP-binding protein OpuBA family protein; KEGG: bur:Bcep18194_B0497 1.5e-72 ABC proline/glycine betaine transporter, ATPase subunit K05847; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, substrate-binding protein, QAT family; KEGG: cvi:CV_4392 3.3e-82 ABC transporter K05845; Psort location: CytoplasmicMembrane, score: 9.51.	0.999
EHL96097.1	EHL96094.1	HMPREF9946_04993	HMPREF9946_04990	ABC transporter, permease protein; KEGG: lwe:lwe1439 1.2e-28 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.505
EHL96097.1	EHL96095.1	HMPREF9946_04993	HMPREF9946_04991	ABC transporter, permease protein; KEGG: lwe:lwe1439 1.2e-28 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: lmf:LMOf2365_1441 9.1e-31 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.	0.977