STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI47235.1Hypothetical protein. (59 aa)    
Predicted Functional Partners:
AGI47234.1
Proton-translocating NADH-quinone oxidoreductase, chain N.
       0.526
AGI47236.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.483
AGI47237.1
Geranylgeranyl reductase family.
       0.483
AGI47225.1
NADH:ubiquinone oxidoreductase 27 kD subunit.
       0.420
AGI47226.1
NADH:ubiquinone oxidoreductase 49 kD subunit 7.
       0.420
AGI47227.1
NADH:ubiquinone oxidoreductase subunit 1 (chain H).
       0.420
AGI47228.1
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
       0.420
AGI47229.1
NADH:ubiquinone oxidoreductase subunit 6 (chain J).
       0.420
AGI47230.1
Hypothetical protein.
       0.420
AGI47231.1
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K).
       0.420
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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