AGI47277.1 protein (Thermoplasmatales archaeon BRNA1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI47277.1

Conserved hypothetical protein TIGR00268. (256 aa)

Predicted Functional Partners:

AGI47275.1

0.996

AGI47276.1

0.995

AGI47278.1

0.773

AGI48370.1

0.756

AGI48104.1

0.735

AGI48172.1

0.734

AGI48210.1

0.673

AGI47498.1

0.649

AGI47279.1

0.525

AGI47280.1

0.496

Your Current Organism:

Thermoplasmatales archaeon BRNA1

NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI47275.1	AGI47276.1	TALC_00265	TALC_00266	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	NCAIR mutase (PurE)-related protein.	0.989
AGI47275.1	AGI47277.1	TALC_00265	TALC_00267	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Conserved hypothetical protein TIGR00268.	0.996
AGI47275.1	AGI47278.1	TALC_00265	TALC_00268	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Putative transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.	0.773
AGI47275.1	AGI47279.1	TALC_00265	TALC_00269	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Hypothetical protein.	0.525
AGI47275.1	AGI47280.1	TALC_00265	TALC_00270	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Putative DNA-binding protein with PD1-like DNA-binding motif.	0.488
AGI47275.1	AGI48210.1	TALC_00265	TALC_01223	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Cobalamin biosynthesis protein CbiM.	0.545
AGI47275.1	AGI48370.1	TALC_00265	TALC_01392	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	Hypothetical protein.	0.574
AGI47276.1	AGI47275.1	TALC_00266	TALC_00265	NCAIR mutase (PurE)-related protein.	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	0.989
AGI47276.1	AGI47277.1	TALC_00266	TALC_00267	NCAIR mutase (PurE)-related protein.	Conserved hypothetical protein TIGR00268.	0.995
AGI47276.1	AGI47278.1	TALC_00266	TALC_00268	NCAIR mutase (PurE)-related protein.	Putative transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.	0.773
AGI47276.1	AGI47279.1	TALC_00266	TALC_00269	NCAIR mutase (PurE)-related protein.	Hypothetical protein.	0.525
AGI47276.1	AGI47280.1	TALC_00266	TALC_00270	NCAIR mutase (PurE)-related protein.	Putative DNA-binding protein with PD1-like DNA-binding motif.	0.488
AGI47276.1	AGI48210.1	TALC_00266	TALC_01223	NCAIR mutase (PurE)-related protein.	Cobalamin biosynthesis protein CbiM.	0.684
AGI47276.1	AGI48370.1	TALC_00266	TALC_01392	NCAIR mutase (PurE)-related protein.	Hypothetical protein.	0.761
AGI47277.1	AGI47275.1	TALC_00267	TALC_00265	Conserved hypothetical protein TIGR00268.	Conserved hypothetical protein TIGR00299; Belongs to the LarC family.	0.996
AGI47277.1	AGI47276.1	TALC_00267	TALC_00266	Conserved hypothetical protein TIGR00268.	NCAIR mutase (PurE)-related protein.	0.995
AGI47277.1	AGI47278.1	TALC_00267	TALC_00268	Conserved hypothetical protein TIGR00268.	Putative transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.	0.773
AGI47277.1	AGI47279.1	TALC_00267	TALC_00269	Conserved hypothetical protein TIGR00268.	Hypothetical protein.	0.525
AGI47277.1	AGI47280.1	TALC_00267	TALC_00270	Conserved hypothetical protein TIGR00268.	Putative DNA-binding protein with PD1-like DNA-binding motif.	0.496
AGI47277.1	AGI47498.1	TALC_00267	TALC_00497	Conserved hypothetical protein TIGR00268.	Biotin synthase-related enzyme.	0.649